Welcome to Lab Speleman Dried Protocols’s documentation!

Indices and tables

• Index
• Module Index
• Search Page

Mission statement

All the work we do at Speleman Lab depends on the quality of the data we produce and how we handle it. In these documentation pages, data protocols that all Lab Speleman lab technicians, PhD students, postdoctoral researcher’s and principal investigators should adhere to are collected. This is not the Bible, so it will be subject to change. Always note the version name on the document you are working with, and check if a more recent version is not available.

General data management obligations

• Upon joining Speleman Lab, register to the HPC Speleman VO group.
• Upon leaving Speleman Lab, transfer the rights to your HPC data folders, to the HPC Speleman VO group administrators.

OMICS data collection protocol

Description

Protocol to follow for all big data sets: high throughput sequencing or proteomics.

Protocol

1. Upon receiving data files, check integrity of all files.
2. Collect metadata for all samples related to data files.
3. Do a quality run on the data.
4. If quality satisfying, upload all raw data to ArrayExpress. An additional copy of the data can be kept within the HPC Speleman VO’s data directory during the project’s lifespan up to publication. After publication data on ArrayExpress should become public and the private copy redundant.
5. Register your dataset at Lab Speleman omics dataset registration form

version commit 7f7dc08 - Christophe Van Neste, Katleen De Preter, Frank Speleman